Models and Algorithms for Genome Evolution 9781447152989, 1447152980

Part I: Emergence of Standard Algorithms -- What's Behind Blast -- Forty Years of Model-Based Phylogeography -- How

397 48 2MB

English Pages 328 Year 2013

Models and Algorithms for Genome Evolution
9781447152989, 1447152980

Author / Uploaded
Chauve
Cedric;El-Mabrouk
Nadia;Tannier
Eric

Table of contents :
Part I: Emergence of Standard Algorithms --
What's Behind Blast --
Forty Years of Model-Based Phylogeography --
How to Infer Ancestral Genome Features by Parsimony --
Duplication, Rearrangement and Reconciliation --
The Genesis of the DCJ Formula --
Part II: New Lights on Current Paradigms --
Large-Scale Multiple Sequence Alignment and Phylogeny Estimation --
Rearrangements in Phylogenetic Inference --
Status of Research on Insertion and Deletion Variations in the Human Population --
A Retrospective on Genomic Preprocessing for Comparative Genomics --
A Comparison of DCJ and Algebraic Distances --
Part III: Promising Directions --
Fractionation, Rearrangement, Consolidation, Reconstruction --
Error Detection and Correction of Gene Trees --
The Potential of Family-Free Genome Comparison --
Genetic History of Populations.

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